How to completely extract the green pixels from this image?
I have used this code to extract only the plant canopy. inimage = imread('AA100401.jpg'); %// type uint8 mask = inimage(:,:,1)
Prashant Kumar answered .
2025-11-20
Try the Color Thresholder on the Apps tab of the tool ribbon. Use HSV color space, then click the Export function button on the tool ribbon.
clc; % Clear the command window.
close all; % Close all figures (except those of imtool.)
clear; % Erase all existing variables. Or clearvars if you want.
workspace; % Make sure the workspace panel is showing.
format long g;
format compact;
fontSize = 16;
markerSize = 20;
%--------------------------------------------------------------------------------------------------------
% READ IN TEST IMAGE
folder = pwd;
baseFileName = 'Malini.webp';
fullFileName = fullfile(folder, baseFileName);
% Check if file exists.
if ~isfile(fullFileName)
% The file doesn't exist -- didn't find it there in that folder.
% Check the entire search path (other folders) for the file by stripping off the folder.
fullFileNameOnSearchPath = baseFileName; % No path this time.
if ~exist(fullFileNameOnSearchPath, 'file')
% Still didn't find it. Alert user.
errorMessage = sprintf('Error: %s does not exist in the search path folders.', fullFileName);
uiwait(warndlg(errorMessage));
return;
end
end
rgbImage = imread(fullFileName);
%--------------------------------------------------------------------------------------------------------
% Display the image.
subplot(2, 2, 1);
imshow(rgbImage, []);
impixelinfo;
axis('on', 'image');
title('Original RGB Image', 'FontSize', fontSize, 'Interpreter', 'None');
% Update the dimensions of the image.
% numberOfColorChannels should be = 1 for a gray scale image, and 3 for an RGB color image.
[rows, columns, numberOfColorChannels] = size(rgbImage)
rows = 478 columns = 639 numberOfColorChannels = 3
% Maximize window.
g = gcf;
g.WindowState = 'maximized';
g.Name = 'Demo by Image Analyst';
g.NumberTitle = 'off';
drawnow;
%--------------------------------------------------------------------------------------------
% Threshold image.
[mask,maskedRGBImage] = createMask(rgbImage);
% Fill holes.
mask = imfill(mask, 'holes');
% Take largest blob.
mask = bwareafilt(mask, 1);
subplot(2, 2, 2);
imshow(mask)
impixelinfo;
axis('on', 'image');
title('Mask', 'FontSize', fontSize, 'Interpreter', 'None');
drawnow;
subplot(2, 2, 3);
imshow(maskedRGBImage)
impixelinfo;
axis('on', 'image');
title('Masked RGBImage', 'FontSize', fontSize, 'Interpreter', 'None');
drawnow;
%================================================================================================
function [BW,maskedRGBImage] = createMask(RGB)
%createMask Threshold RGB image using auto-generated code from colorThresholder app.
% [BW,MASKEDRGBIMAGE] = createMask(RGB) thresholds image RGB using
% auto-generated code from the colorThresholder app. The colorspace and
% range for each channel of the colorspace were set within the app. The
% segmentation mask is returned in BW, and a composite of the mask and
% original RGB images is returned in maskedRGBImage.
% Auto-generated by colorThresholder app on 08-Jan-2024
%------------------------------------------------------
% Convert RGB image to chosen color space
I = rgb2hsv(RGB);
% Define thresholds for channel 1 based on histogram settings
channel1Min = 0.128;
channel1Max = 0.458;
% Define thresholds for channel 2 based on histogram settings
channel2Min = 0.000;
channel2Max = 1.000;
% Define thresholds for channel 3 based on histogram settings
channel3Min = 0.167;
channel3Max = 1.000;
% Create mask based on chosen histogram thresholds
sliderBW = (I(:,:,1) >= channel1Min ) & (I(:,:,1) <= channel1Max) & ...
(I(:,:,2) >= channel2Min ) & (I(:,:,2) <= channel2Max) & ...
(I(:,:,3) >= channel3Min ) & (I(:,:,3) <= channel3Max);
BW = sliderBW;
% Initialize output masked image based on input image.
maskedRGBImage = RGB;
% Set background pixels where BW is false to zero.
maskedRGBImage(repmat(~BW,[1 1 3])) = 0;
end